Carregant...
Carregant...

Vés al contingut (premeu Retorn)

GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees

Autor
Kedzierska, A.; Casanellas, M.
Tipus d'activitat
Article en revista
Revista
BMC bioinformatics
Data de publicació
2012-08-28
Volum
13
Número
216
Pàgina inicial
1
Pàgina final
4
DOI
https://doi.org/10.1186/1471-2105-13-216 Obrir en finestra nova
Projecte finançador
Geometría de variedades algebraicas y aplicaciones
Repositori
http://hdl.handle.net/2117/17957 Obrir en finestra nova
URL
http://www.biomedcentral.com/1471-2105/13/216/abstract Obrir en finestra nova
Resum
Background: A number of software packages are available to generate DNA multiple sequence alignments (MSAs) evolved under continuous-time Markov processes on phylogenetic trees. On the other hand, methods of simulating the DNA MSA directly from the transition matrices do not exist. Moreover, existing software restricts to the time-reversible models and it is not optimized to generate nonhomogeneous data (i.e. placing distinct substitution rates at different lineages). Results: We present the fir...
Citació
Kedzierska, A.; Casanellas, M. GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees. "BMC bioinformatics", 28 Agost 2012, vol. 13, núm. 216, p. 1-4.
Grup de recerca
GEOMVAP - Geometria de Varietats i Aplicacions

Participants

Arxius