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BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS

Autor
Fosso, B.; Santamaria, M.; Marzano, M.; Alonso-Alemany, D.; Valiente, G.; Donvito, G.; monaco, A.; Notarangelo, P.; Pesole, G.
Tipus d'activitat
Article en revista
Revista
BMC bioinformatics
Data de publicació
2015-07-01
Volum
16:203
Pàgina inicial
1
Pàgina final
11
DOI
https://doi.org/10.1186/s12859-015-0595-z Obrir en finestra nova
Repositori
http://hdl.handle.net/2117/77809 Obrir en finestra nova
URL
http://www.biomedcentral.com/1471-2105/16/203/abstract Obrir en finestra nova
Resum
Background: Substantial advances in microbiology, molecular evolution and biodiversity have been carried out in recent years thanks to Metagenomics, which allows to unveil the composition and functions of mixed microbial communities in any environmental niche. If the investigation is aimed only at the microbiome taxonomic structure, a target-based metagenomic approach, here also referred as Meta-barcoding, is generally applied. This approach commonly involves the selective amplification of a spe...
Citació
Fosso, B., Santamaria, M., Marzano, M., Alonso-Alemany, D., Valiente, G., Donvito, G., Monaco, A., Notarangelo, P., Pesole, G. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. "BMC bioinformatics", 01 Juliol 2015, vol. 16:203, p. 1-11.
Paraules clau
High-Throughput Sequencing, Meta-barcoding, Metagenomics, Microbiome
Grup de recerca
ALBCOM - Algorismia, Bioinformàtica, Complexitat i Mètodes Formals

Participants

  • Fosso, Bruno  (autor)
  • Santamaria, Monica  (autor)
  • Marzano, Marinella  (autor)
  • Alonso Alemany, Daniel  (autor)
  • Valiente Feruglio, Gabriel Alejandro  (autor)
  • Donvito, Giacinto  (autor)
  • monaco, Alfonso  (autor)
  • Notarangelo, Pasquale  (autor)
  • Pesole, Graziano  (autor)

Arxius