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  • The bubble model: mathematically explaining how active TB is possible  Open access

     Prats Soler, Clara; Valls Ribas, Joaquim; Sans, Neus; Lopez Codina, Daniel; Vilaplana, Cristina; Marzo, Elena; Cardona Iglesias, Pere Joan
    The Union World Conference on Lung Health
    p. S30-
    Presentation's date: 2014-10-31
    Presentation of work at congresses
    Access to the full text
  • To achieve an earlier IFN-¿ response is not sufficient to control mycobacterium tuberculosis infection in mice  Open access

     Vilaplana, Cristina; Prats Soler, Clara; Marzo, Elena; Barril Basil, Carles; Vegué Llorente, Marina; Díaz, Jorge; Valls Ribas, Joaquim; Lopez Codina, Daniel; Cardona Iglesias, Pere Joan
    PLoS one
    Vol. 9, num. 6, p. e100830-
    DOI: 10.1371/journal.pone.0100830
    Date of publication: 2014-06-24
    Journal article
    Access to the full text
  • Grup de recerca consolidat en Biologia Computacional i Sistemes Complexos

     Echebarria Dominguez, Blas; Auguet Sangra, Carlota Eugenia; Peñaranda Ayllon, Angelina; Ramirez de La Piscina Millan, Laureano; Alvarez Lacalle, Enrique; Alonso Muñoz, Sergio; Giro Roca, Antoni; Ginovart Gisbert, Marta; Lopez Codina, Daniel; Valls Ribas, Joaquim; Prats Soler, Clara; Carbo Moliner, Rosa; Gras Moreu, Anna Maria; Araujo Granda, Pablo Alejandro; Gonzalez Cinca, Ricardo; Arias Calderón, Santiago; Suñol Galofre, Francesc Xavier; Garcia Sabate, Anna; Odriozola Rodriguez Facio, Maria Noel
    Competitive project
  • Evolution and role of corded cell aggregation in Mycobacterium tuberculosis cultures

     Cáceres, Neus; Vilaplana, Cristina; Prats Soler, Clara; Marzo, Elena; Llopis Fuste, Isaac; Valls Ribas, Joaquim; Lopez Codina, Daniel; Cardona Iglesias, Pere Joan
    Tuberculosis
    Vol. 93, num. 6, p. 690-698
    DOI: 10.1016/j.tube.2013.08.003
    Date of publication: 2013-11
    Journal article
  • Spatial growth of Mycobacterium tuberculosis in lungs: the bubble model

     Prats Soler, Clara; Valls Ribas, Joaquim; Vilaplana, Cristina; Marzo, Elena; Cardona Iglesias, Pere Joan; Lopez Codina, Daniel
    International Conference on Environmental, Industrial and Applied Microbiology
    p. 513-
    Presentation's date: 2013-10-03
    Presentation of work at congresses
  • A proposal for automatic diagnosis of malaria

     Oliveira, Allisson D.; Cabral, Giordano; Lopez Codina, Daniel; Firmo, Caetano; Zarzuela Serrat, F; Albuquerque, Jones O.
    International World Wide Web Conference
    p. 681-682
    Presentation's date: 2013-05
    Presentation of work at congresses
  • A two years simulation using a real data cellular automaton: A predictive case study with the schistosomiasis expansion process along the coastline of Brazil  Open access

     Albuquerque, Jones O.; Bocanegra, Silvana; Ferrer-Savall, Jordi; Lopez Codina, Daniel; de Souza, Marco Antônio; Souza Santos, Reinaldo; Barbosa, Constança
    systema: connecting matter, life, culture and technology
    Vol. 1, num. 3, p. 83-89
    Date of publication: 2013
    Journal article
    Access to the full text
  • A two-compartment system allows lymphatic tissues to control M. tuberculosis infection in the peripheral organs

     Vilaplana Massaguer, Cristina; Prats Soler, Clara; Marzo, Elena; Barril Basil, Carles; Llopis Fuste, Isaac; Díaz, Julio; Valls Ribas, Joaquim; Lopez Codina, Daniel; Cardona Iglesias, Pere Joan
    European Congress of Immunology
    Presentation's date: 2012-09-07
    Presentation of work at congresses
  • A biphasic model for fitting optical density measurements to bacterial cell counts and its application on the instantaneous growth rate evaluation

     Ye, Wei Hong; Prats Soler, Clara; Bover-Cid, Sara; Garriga, Margarita; Lopez Codina, Daniel
    International ICFMH Symposium (Food Micro)
    p. 612
    Presentation's date: 2012-09-04
    Presentation of work at congresses
  • Agent-based Models in malaria elimination strategy design

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Valls Ribas, Joaquim
    European Meeting on Cybernetics and Systems Research
    Presentation's date: 2012-04
    Presentation of work at congresses
  • Low dose aerosol fitness at the innate phase of murine infection better predicts virulence amongst clinical strains of mycobacterium tuberculosis  Open access

     Cáceres, Neus; Llopis Fuste, Isaac; Marzo, Elena; Prats Soler, Clara; Vilaplana, Cristina; García de Viedma, Darío; Samper, Sofia; Lopez Codina, Daniel; Cardona Iglesias, Pere Joan
    PLoS one
    Vol. 7, num. 1, p. e29010-
    DOI: 10.1371/journal.pone.0029010
    Date of publication: 2012-01-03
    Journal article
    Access to the full text
  • Mart XXI o de com anar de la secundària a la universitat passant per Mart

     Almansa Lagunas, Clara; Blay Carreras, Estel; Casas Carbonell, Montserrat; Delgado Muñoz, Luis; Gutierrez Cabello, Jorge Luis; Jove Casulleras, Roger; Lopez Codina, Daniel; López Rubio, Juan; Loren Aguilar, Pablo; Marando, Graciela; Monfort Peligero, Lluís; Nebra, Norbert; Pera, Francesc; Portell Canal, Xavier; Ramírez Alcantara, Jorge; Sagardoy, Juli; Sánchez, Álex
    Date: 2011-11-22
    Report
  • Thermodynamic concepts in the study of microbial populations: age structure in plasmodium falciparum infected red blood cells  Open access

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Vidal-Mas, Jaume; Gargallo-Viola, Domingo; Guglietta, Antonio; Giro Roca, Antoni
    PLoS one
    Vol. 6, num. 10, p. e26690 1-e26690 11
    DOI: 10.1371/journal.pone.0026690
    Date of publication: 2011-10-31
    Journal article
    Access to the full text
  • New insights on the virulence determination of M. tuberculosis clinical strains by applying different "in vitro" and "in vivo" strategies

     Cáceres, Neus; Llopis Fuste, Isaac; Marzo, Elena; Vilaplana, Cristina; Díaz Muñoz, Jorge Gerardo; Alonso, María; García de Viedma, Darío; Alonso, Henar; Samper, Sofia; Prats Soler, Clara; Lopez Codina, Daniel; Cardona, Joan Pere
    International Conference on the Pathogenesis of Mycobacterial Infections
    p. 97
    Presentation's date: 2011-07-01
    Presentation of work at congresses
  • Método de valoración de virulencia de cepas de Mycobacterium tuberculosis complex y uso de los agregados bacilares de cepas de Mycobacterium tuberculosis complex en cultivo líquido para dicha valoración

     Prats Soler, Clara; Llopis Fuste, Isaac; Lopez Codina, Daniel; Caceres Casademunt, Neus; Cardona Iglesias, Pere Joan; Vilaplana Massaguer, Cristina
    Date of request: 2011-06-22
    Invention patent
  • Premi a la millor tesi doctoral en Ciencies 2010

     Ferrer Savall, Jordi; Lopez Codina, Daniel; Valls Ribas, Joaquim
    Award or recognition
  • Modelización basada en el individuo (IBM) perspectiva multidisclipinar en microbiologia aplicada: alimentos, medioambiente y salud

     Prats Soler, Clara; Valls Ribas, Joaquim; Carbo Moliner, Rosa; Ginovart Gisbert, Marta; Giro Roca, Antoni; Gras Moreu, Anna Maria; Portell Canal, Xavier; Ferrer Savall, Jordi; Silbert, Moises; Lopez Codina, Daniel
    Competitive project
  • Contribution of individual-based models in malaria elimination strategy design

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Valls Ribas, Joaquim; Gargallo Viola, Domingo
    Parasite to prevention, advandes in understanding malaria
    p. 27
    DOI: 10.1186/1475-2875-9-S2-P9
    Presentation's date: 2010-10-20
    Presentation of work at congresses
  • Analysis of the population structure of Plasmodium falciparum-infected erythrocytes  Open access

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Gargallo Viola, Domingo; Valls Ribas, Joaquim
    Current opinion in celular host-pathogen interactions
    p. 3
    Presentation's date: 2010-09-05
    Presentation of work at congresses
    Access to the full text
  • Population-based and individual-based modelling of high hydrostatic pressure effect in Listeria monocytogenes on sliced dry-cured ham  Open access

     Prats Soler, Clara; Bover Cid, Sara; Garriga, Margarita; Aymerich Calvet, Teresa; Ferrer Savall, Jordi; Lopez Codina, Daniel
    International ICFMH Symposium (Food Micro)
    p. 174
    Presentation's date: 2010-09-01
    Presentation of work at congresses
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  • Individual-based modeling of Plasmodium falciparum erythrocyte infection in in vitro cultures  Open access

     Ferrer Savall, Jordi
    Department of Physics and Nuclear Engineering, Universitat Politècnica de Catalunya
    Theses
  • On the evolution of cell size distribution during bacterial growth cycle: experimental observations and individual-based model simulations  Open access

     Prats Soler, Clara; Ferrer Savall, Jordi; Lopez Codina, Daniel; Giro Roca, Antoni; Vives-Rego, Josep
    African journal of microbiology research
    Vol. 4, num. 5, p. 400-407
    Date of publication: 2010-03
    Journal article
    Access to the full text
  • Microbiología predictiva: una herramienta imprescindible en seguridad alimentaria  Open access

     Prats Soler, Clara; Ferrer Savall, Jordi; Lopez Codina, Daniel
    Reunión Científica Hispano-Marroquí sobre Seguridad Alimentaria
    p. 34-35
    Presentation's date: 2009-10-20
    Presentation of work at congresses
  • Mathematical modelling methodologies in predictive food microbiology: a SWOT analysis

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Vives-Rego, Josep
    International journal of food microbiology
    Vol. 134, num. 1-2, p. 2-8
    Date of publication: 2009-08
    Journal article
    Image
  • Optimization methods for individual-based model parameter estimation in predictive microbiology

     Prats Soler, Clara; Bernaerts, K.; Standaert, A.; Ferrer Savall, Jordi; Lopez Codina, Daniel; Van Impe, J.
    Vienna Conference on Mathematical Modelling
    p. 2635-2638
    Presentation's date: 2009
    Presentation of work at congresses
    Image
  • BAETULO XXI, o de com arribar a Mart des de la secundària  Open access

     Ayza, Assumpta; Berenguer Sau, Jordi; Carnerero Lopez, Sheila; Crespo Artiaga, Daniel; Lopez Codina, Daniel; López Rubio, Juan; Loren Aguilar, Pablo; Melo Vera, Maria Jesús; Monfort Peligero, Lluís; Pijuan, Caterina; Portell Canal, Xavier; Ramírez Alcantara, Jorge; Serrano Porta, Lydia
    Congrés d'Enginyeria i Cultura Catalana
    Presentation's date: 2008-12-05
    Presentation of work at congresses
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  • Ciencia y tecnología para el desarrollo: una inversión necesaria  Open access

     Lopez Codina, Daniel; Ortega Roig, Xavier; Pérez Foguet, Agustí; Vendrell, Eva
    Congreso Universidad y Cooperación al Desarrollo
    p. 1-7
    Presentation's date: 2008-11-12
    Presentation of work at congresses
    Access to the full text
  • Effect of the haematocrit layer geometry on Plasmodium falciparum static thin-layer in vitro cultures  Open access

     Ferrer Savall, Jordi; Rosal, M; Vidal Sans, Josep; Prats Soler, Clara; Valls Ribas, Joaquim; Herreros, E; Lopez Codina, Daniel; Gargallo, D
    Malaria journal
    Vol. 7, num. 203
    DOI: doi:10.1186/1475-2875-7-203
    Date of publication: 2008-10
    Journal article
    Access to the full text
  • Individual-based modelling of bacterial cultures in the study of the lag phase  Open access

     Prats Soler, Clara
    Department of Applied Physics, Universitat Politècnica de Catalunya
    Theses
  • Analysis and IbM simulation of the stages in bacterial lag phase: basis for an updated definition

     Prats Soler, Clara; Giro Roca, Antoni; Ferrer Savall, Jordi; Lopez Codina, Daniel; Vives-Rego, J
    Journal of theoretical biology
    Vol. 252, num. 1, p. 56-68
    DOI: doi:10.1016/j.jtbi.2008.01.019
    Date of publication: 2008-05
    Journal article
    Image
  • Individual-based modelling: an essential tool for microbiology

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel
    Journal of biological physics
    Vol. 34, num. 1-2, p. 19-37
    Date of publication: 2008-04
    Journal article
    Image
  • Individual-based modelling and flow cytometry: two suitable tools for predictive microbiology

     Prats Soler, Clara; Ferrer Savall, Jordi; Lopez Codina, Daniel; Vives-Rego, J
    International Conference on Simulation and Modelling in the Food and Bio-Industry
    p. 91-95
    Presentation's date: 2008
    Presentation of work at congresses
  • Mathematical modelling methodologies in predictive food microbiology: a SWOT analysis

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel; Vives-Rego, J
    International ICFMH Symposium
    p. 78
    Presentation's date: 2008
    Presentation of work at congresses
  • INDISIM, an Individual-based Model to simulate microbial cultures

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel
    Annual conference of agent-based modelers, platform developers and users
    p. 1
    Presentation of work at congresses
  • Individual-based model and simulation of Plasmodium falciparum infected erythrocyte in vitro cultures

     Ferrer Savall, Jordi; Vidal Sans, Josep; Prats Soler, Clara; Valls Ribas, Joaquim; Herreros, E; Lopez Codina, Daniel; Giro Roca, Antoni; Gargallo, D
    Journal of theoretical biology
    Vol. 248, num. 3, p. 448-459
    Date of publication: 2007-10
    Journal article
    Image
  • Individual based Modelling (IbM) de sistemas microbiológicos para el desarrollo sostenible: medio ambiente, seguridad alimentaria y salud

     Giro Roca, Antoni; Prats Soler, Clara; Lopez Codina, Daniel; Silbert, Moises; Valls Ribas, Joaquim; Gras Moreu, Anna Maria; Ginovart Gisbert, Marta; Portell Canal, Xavier; Ferrer Savall, Jordi
    Competitive project
  • Àfrica, Universitat Politècnica de Catalunya i cooperació al desenvolupament: 15 anys d'història, 15 anys d'aprenentatge  Open access

     Lopez Codina, Daniel; Ortega Roig, Xavier; Pérez Foguet, Agustí; Vendrell, Eva
    Congrés UPC Sostenible 2015
    p. 225-229
    Presentation's date: 2007-07-12
    Presentation of work at congresses
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  • Evolution of biomass distribution during bacterial lag phase through flow cytometry, particle analysis and Individual-based Modelling

     Prats Soler, Clara; Ferrer Savall, Jordi; Flix, B; Giro Roca, Antoni; Lopez Codina, Daniel; Vives-Rego, J
    International Conference Predictive Modelling in Foods
    p. 301-304
    Presentation of work at congresses
  • IbM: An essential tool for microbiology

     Ferrer Savall, Jordi; Prats Soler, Clara; Lopez Codina, Daniel
    International Conference of Biological Physics
    p. 91
    Presentation of work at congresses
  • Spatial properties in Individual- based modelling of microbial systems. Study of the composting process.

     Prats Soler, Clara; Ferrer Savall, Jordi; Giro Roca, Antoni; Lopez Codina, Daniel; Valls Ribas, Joaquim
    Date of publication: 2006-10
    Book chapter
    Image
  • A mathematical analysis of the stages in bacterial lag phase

     Prats Soler, Clara; Giro Roca, Antoni; Lopez Codina, Daniel; Ferrer Savall, Jordi; Valls Ribas, Joaquim; Vives-Rego, Josep
    International ICFMH Symposium
    Presentation's date: 2006-08-30
    Presentation of work at congresses
  • Individual-based modelling of bacterial cultures to study the microscopic causes of the lag phase

     Prats Soler, Clara; Lopez Codina, Daniel; Giro Roca, Antoni; Ferrer Savall, Jordi; Valls Ribas, Joaquim
    Journal of theoretical biology
    Vol. 241, num. 4, p. 939-953
    Date of publication: 2006-08
    Journal article
    Image
  • Flocculation in brewing yeast: a computer simulation study

     Ginovart Gisbert, Marta; Lopez Codina, Daniel; Giro Roca, Antoni; Silbert, Moises
    Biosystems
    num. 83, p. 51-55
    Date of publication: 2006-01
    Journal article
  • A physical interpretation of the microbial growth rate temperature dependence

     Prats Soler, Clara; Ferrer Savall, Jordi; Giro Roca, Antoni; Lopez Codina, Daniel; Valls Ribas, Joaquim
    Sitges Conference on Statistical Mechanics
    p. 161-163
    Presentation of work at congresses
  • A mathematical analysis of the stages in bacterial lag phase

     Prats Soler, Clara; Giro Roca, Antoni; Lopez Codina, Daniel; Ferrer Savall, Jordi; Valls Ribas, Joaquim; Vives-Rego, Josep
    International ICFMH Symposium
    p. 550
    Presentation's date: 2006
    Presentation of work at congresses