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  • Local inflammation, dissemination and coalescence of lesions are key for the progression toward active tuberculosis: the bubble model  Open access

     Prats, C.; Vilaplana, C.; Valls, J.; Marzo, E.; Cardona, P.J.; Lopez, D.
    Frontiers in Microbiology
    Vol. 7, p. 33-
    DOI: 10.3389/fmicb.2016.00033
    Date of publication: 2016-02-02
    Journal article
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  • Individual-based modeling of tuberculosis in a user-friendly interface: Understanding the epidemiological role of population heterogeneity in a city  Open access

     Prats, C.; Montañola-Sales, C.; Gilabert, JF; Valls, J.; Casanovas, J.; Vilaplana, C.; Cardona, P.J.; Lopez, D.
    Frontiers in Microbiology
    Vol. 6:1564
    DOI: 10.3389/fmicb.2015.01564
    Date of publication: 2016-01-01
    Journal article
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  • Modeling tuberculosis in Barcelona. A solution to speed-up agent-based simulations

     Montañola, C.; Gilabert, JF; Casanovas, J.; Prats, C.; Lopez, D.; Valls, J.; Cardona, P.J.; Vilaplana, C.
    Winter Simulation Conference
    p. 1295-1306
    Presentation's date: 2015-12-07
    Presentation of work at congresses
  • Utilización del modelo de Gompertz en forma diferencial para la modelización de la emergencia de malas hierbas  Open access

     Izquierdo, J.; Prats, C.; Lopez, D.
    Congreso de Malherbología
    p. 1-5
    Presentation's date: 2015-10-21
    Presentation of work at congresses
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  • The bubble model: mathematically explaining how active TB is possible  Open access

     Prats, C.; Valls, J.; Sans, N.; Lopez, D.; Vilaplana, C.; Marzo, E.; Cardona, P.J.
    The Union World Conference on Lung Health
    p. S30-
    Presentation's date: 2014-10-31
    Presentation of work at congresses
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  • Malaria System: a new tool for automatic diagnosis of malaria in mobile devices

     Dantas, A.; Eliane , M.; Gómez, J.; Lopez, D.; Zarzuela , F.; Oliveira, J.
    Medicine 2.0: Social Media, Mobile Apps, and Internet/Web 2.0 in Health, Medicine and Biomedical Research
    Presentation's date: 2014-10-09
    Presentation of work at congresses
  • To achieve an earlier IFN-¿ response is not sufficient to control mycobacterium tuberculosis infection in mice  Open access

     Vilaplana, C.; Prats, C.; Marzo, E.; Barril, C.; Vegué, M.; Jorge, D.; Valls, J.; Lopez, D.; Cardona, P.J.
    PLoS one
    Vol. 9, num. 6, p. e100830-
    DOI: 10.1371/journal.pone.0100830
    Date of publication: 2014-06-24
    Journal article
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  • Grup de recerca consolidat en Biologia Computacional i Sistemes Complexos

     Echebarria, B.; Auguet, C.; Peñaranda, A.; Ramirez de La Piscina, L.; Alvarez-Lacalle, E.; Alonso, S.; Giro, A.; Ginovart, M.; Lopez, D.; Valls, J.; Prats, C.; Carbo, R.; Gras, A.; Araujo, P.; Gonzalez, R.; Arias, S.; Suñol, F.; Garcia-Sabaté, A.; Odriozola, M.
    Competitive project
  • Evolution and role of corded cell aggregation in Mycobacterium tuberculosis cultures

     Cáceres, N.; Vilaplana, C.; Prats, C.; Marzo, E.; Llopis, I.; Valls, J.; Lopez, D.; Cardona, P.J.
    Tuberculosis
    Vol. 93, num. 6, p. 690-698
    DOI: 10.1016/j.tube.2013.08.003
    Date of publication: 2013-11
    Journal article
  • Spatial growth of Mycobacterium tuberculosis in lungs: the bubble model

     Prats, C.; Valls, J.; Vilaplana, C.; Marzo, E.; Cardona, P.J.; Lopez, D.
    International Conference on Environmental, Industrial and Applied Microbiology
    p. 513-
    Presentation's date: 2013-10-03
    Presentation of work at congresses
  • A proposal for automatic diagnosis of malaria

     Oliveira, A.; Cabral, G.; Lopez, D.; Firmo, C.; Zarzuela, F.; Albuquerque, J.
    International World Wide Web Conference
    p. 681-682
    Presentation's date: 2013-05
    Presentation of work at congresses
  • A two years simulation using a real data cellular automaton: A predictive case study with the schistosomiasis expansion process along the coastline of Brazil  Open access

     Albuquerque, J.; Bocanegra, S.; Ferrer-Savall, J.; Lopez, D.; de Souza, M.; Souza, R.; Barbosa, C.
    systema: connecting matter, life, culture and technology
    Vol. 1, num. 3, p. 83-89
    Date of publication: 2013
    Journal article
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  • A two-compartment system allows lymphatic tissues to control M. tuberculosis infection in the peripheral organs

     Vilaplana, C.; Prats, C.; Marzo, E.; Barril, C.; Llopis, I.; Díaz, J.; Valls, J.; Lopez, D.; Cardona, P.J.
    European Congress of Immunology
    Presentation's date: 2012-09-07
    Presentation of work at congresses
  • A biphasic model for fitting optical density measurements to bacterial cell counts and its application on the instantaneous growth rate evaluation

     Ye, W.H.; Prats, C.; Bover-Cid, S.; Garriga, M.; Lopez, D.
    International ICFMH Symposium (Food Micro)
    p. 612
    Presentation's date: 2012-09-04
    Presentation of work at congresses
  • Agent-based Models in malaria elimination strategy design

     Ferrer, J.; Prats, C.; Lopez, D.; Valls, J.
    European Meeting on Cybernetics and Systems Research
    Presentation's date: 2012-04
    Presentation of work at congresses
  • Low dose aerosol fitness at the innate phase of murine infection better predicts virulence amongst clinical strains of mycobacterium tuberculosis  Open access

     Cáceres, N.; Llopis, I.; Marzo, E.; Prats, C.; Vilaplana, C.; García de Viedma, D.; Samper, S.; Lopez, D.; Cardona, P.J.
    PLoS one
    Vol. 7, num. 1, p. e29010-
    DOI: 10.1371/journal.pone.0029010
    Date of publication: 2012-01-03
    Journal article
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  • Mart XXI o de com anar de la secundària a la universitat passant per Mart

     Almansa, C.; Blay, E.; Casas, M.; Delgado, L.; Gutierrez, J.; Jove-Casulleras, R.; Lopez, D.; Lopez, J.; Loren, P.; Marando, G.; Monfort, L.; Nebra, N.; Pera, F.; Portell, X.; Ramirez, J.; Sagardoy, J.; Sánchez, Á.
    Date: 2011-11-22
    Report
  • Thermodynamic concepts in the study of microbial populations: age structure in plasmodium falciparum infected red blood cells  Open access

     Ferrer, J.; Prats, C.; Lopez, D.; Vidal-Mas, J.; Gargallo-Viola, D.; Guglietta, A.; Giro, A.
    PLoS one
    Vol. 6, num. 10, p. e26690 1-e26690 11
    DOI: 10.1371/journal.pone.0026690
    Date of publication: 2011-10-31
    Journal article
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  • New insights on the virulence determination of M. tuberculosis clinical strains by applying different "in vitro" and "in vivo" strategies

     Cáceres, N.; Llopis, I.; Marzo, E.; Vilaplana, C.; Díaz, J.; Alonso, M.; García de Viedma, D.; Alonso, H.; Samper, S.; Prats, C.; Lopez, D.; Cardona, J.
    International Conference on the Pathogenesis of Mycobacterial Infections
    p. 97
    Presentation's date: 2011-07-01
    Presentation of work at congresses
  • Modelización basada en el individuo (IBM) perspectiva multidisclipinar en microbiologia aplicada: alimentos, medioambiente y salud

     Prats, C.; Valls, J.; Carbo, R.; Ginovart, M.; Giro, A.; Gras, A.; Portell, X.; Ferrer, J.; Silbert, M.; Lopez, D.
    Competitive project
  • Premi a la millor tesi doctoral en Ciencies 2010

     Ferrer, J.; Lopez, D.; Valls, J.
    Award or recognition
  • Contribution of individual-based models in malaria elimination strategy design

     Ferrer, J.; Prats, C.; Lopez, D.; Valls, J.; Gargallo-viola, D.
    Parasite to prevention, advandes in understanding malaria
    p. 27
    DOI: 10.1186/1475-2875-9-S2-P9
    Presentation's date: 2010-10-20
    Presentation of work at congresses
  • Analysis of the population structure of Plasmodium falciparum-infected erythrocytes  Open access

     Ferrer, J.; Prats, C.; Lopez, D.; Gargallo-viola, D.; Valls, J.
    Current opinion in celular host-pathogen interactions
    p. 3
    Presentation's date: 2010-09-05
    Presentation of work at congresses
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  • Population-based and individual-based modelling of high hydrostatic pressure effect in Listeria monocytogenes on sliced dry-cured ham  Open access

     Prats, C.; Bover-Cid, S.; Garriga, M.; Aymerich, T.; Ferrer, J.; Lopez, D.
    International ICFMH Symposium (Food Micro)
    p. 174
    Presentation's date: 2010-09-01
    Presentation of work at congresses
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  • Individual-based modeling of Plasmodium falciparum erythrocyte infection in in vitro cultures  Open access

     Ferrer, J.
    Department of Physics and Nuclear Engineering, Universitat Politècnica de Catalunya
    Theses
  • On the evolution of cell size distribution during bacterial growth cycle: experimental observations and individual-based model simulations  Open access

     Prats, C.; Ferrer, J.; Lopez, D.; Giro, A.; Vives-Rego, J.
    African journal of microbiology research
    Vol. 4, num. 5, p. 400-407
    Date of publication: 2010-03
    Journal article
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  • Microbiología predictiva: una herramienta imprescindible en seguridad alimentaria  Open access

     Prats, C.; Ferrer, J.; Lopez, D.
    Reunión Científica Hispano-Marroquí sobre Seguridad Alimentaria
    p. 34-35
    Presentation's date: 2009-10-20
    Presentation of work at congresses
  • Mathematical modelling methodologies in predictive food microbiology: a SWOT analysis

     Ferrer, J.; Prats, C.; Lopez, D.; Vives-Rego, J.
    International journal of food microbiology
    Vol. 134, num. 1-2, p. 2-8
    Date of publication: 2009-08
    Journal article
  • Optimization methods for individual-based model parameter estimation in predictive microbiology

     Prats, C.; Bernaerts, K.; Standaert, A.; Ferrer, J.; Lopez, D.; Van Impe, J.
    Vienna Conference on Mathematical Modelling
    p. 2635-2638
    Presentation's date: 2009
    Presentation of work at congresses
  • BAETULO XXI, o de com arribar a Mart des de la secundària  Open access

     Ayza, A.; Berenguer-Sau, J.; Carnerero, S.; Crespo, D.; Lopez, D.; Lopez, J.; Loren, P.; Melo, M.; Monfort, L.; Pijuan, C.; Portell, X.; Ramirez, J.; Serrano, L.
    Congrés d'Enginyeria i Cultura Catalana
    Presentation's date: 2008-12-05
    Presentation of work at congresses
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  • Ciencia y tecnología para el desarrollo: una inversión necesaria  Open access

     Lopez, D.; Ortega, X.; Pérez-Foguet, A.; Vendrell, E.
    Congreso Universidad y Cooperación al Desarrollo
    p. 1-7
    Presentation's date: 2008-11-12
    Presentation of work at congresses
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  • Effect of the haematocrit layer geometry on Plasmodium falciparum static thin-layer in vitro cultures  Open access

     Ferrer, J.; Rosal, M.; Vidal, J.; Prats, C.; Valls, J.; Herreros, E.; Lopez, D.; Gargallo, D.
    Malaria journal
    Vol. 7, num. 203
    DOI: doi:10.1186/1475-2875-7-203
    Date of publication: 2008-10
    Journal article
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  • Individual-based modelling of bacterial cultures in the study of the lag phase  Open access

     Prats, C.
    Department of Applied Physics, Universitat Politècnica de Catalunya
    Theses
  • Analysis and IbM simulation of the stages in bacterial lag phase: basis for an updated definition

     Prats, C.; Giro, A.; Ferrer, J.; Lopez, D.; Vives-Rego, J.
    Journal of theoretical biology
    Vol. 252, num. 1, p. 56-68
    DOI: doi:10.1016/j.jtbi.2008.01.019
    Date of publication: 2008-05
    Journal article
  • Individual-based modelling: an essential tool for microbiology

     Ferrer, J.; Prats, C.; Lopez, D.
    Journal of biological physics
    Vol. 34, num. 1-2, p. 19-37
    Date of publication: 2008-04
    Journal article
  • Mathematical modelling methodologies in predictive food microbiology: a SWOT analysis

     Ferrer, J.; Prats, C.; Lopez, D.; Vives-Rego, J.
    International ICFMH Symposium
    p. 78
    Presentation's date: 2008
    Presentation of work at congresses
  • INDISIM, an Individual-based Model to simulate microbial cultures

     Ferrer, J.; Prats, C.; Lopez, D.
    Annual conference of agent-based modelers, platform developers and users
    p. 1
    Presentation of work at congresses
  • Individual-based modelling and flow cytometry: two suitable tools for predictive microbiology

     Prats, C.; Ferrer, J.; Lopez, D.; Vives-Rego, J.
    International Conference on Simulation and Modelling in the Food and Bio-Industry
    p. 91-95
    Presentation's date: 2008
    Presentation of work at congresses
  • Individual based Modelling (IbM) de sistemas microbiológicos para el desarrollo sostenible: medio ambiente, seguridad alimentaria y salud

     Giro, A.; Prats, C.; Lopez, D.; Silbert, M.; Valls, J.; Gras, A.; Ginovart, M.; Portell, X.; Ferrer, J.
    Competitive project
  • Individual-based model and simulation of Plasmodium falciparum infected erythrocyte in vitro cultures

     Ferrer, J.; Vidal, J.; Prats, C.; Valls, J.; Herreros, E.; Lopez, D.; Giro, A.; Gargallo, D.
    Journal of theoretical biology
    Vol. 248, num. 3, p. 448-459
    Date of publication: 2007-10
    Journal article
  • Àfrica, Universitat Politècnica de Catalunya i cooperació al desenvolupament: 15 anys d'història, 15 anys d'aprenentatge  Open access

     Lopez, D.; Ortega, X.; Pérez-Foguet, A.; Vendrell, E.
    Congrés UPC Sostenible 2015
    p. 225-229
    Presentation's date: 2007-07-12
    Presentation of work at congresses
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  • Evolution of biomass distribution during bacterial lag phase through flow cytometry, particle analysis and Individual-based Modelling

     Prats, C.; Ferrer, J.; Flix, B.; Giro, A.; Lopez, D.; Vives-Rego, J.
    International Conference Predictive Modelling in Foods
    p. 301-304
    Presentation of work at congresses
  • IbM: An essential tool for microbiology

     Ferrer, J.; Prats, C.; Lopez, D.
    International Conference of Biological Physics
    p. 91
    Presentation of work at congresses