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Visualization of sequence and structural features of genomes and chromosome fragments. Application to CpG islands, Alu sequences and whole genomes

Autor
Subirana, J.; Anokian, E.
Tipus d'activitat
Article en revista
Revista
Gene
Data de publicació
2011-03-01
Volum
473
Número
2
Pàgina inicial
76
Pàgina final
81
DOI
https://doi.org/10.1016/j.gene.2010.11.008 Obrir en finestra nova
Repositori
http://hdl.handle.net/2117/13244 Obrir en finestra nova
Resum
A very simple new program is presented (G-SQUARES). It is useful in order to visualize the composition and basic structural features of whole genomes and selected chromosome regions. The frequency of all dimer and tetramer sequences is reported. Overall structural features are calculated, such as the tendency for alternation. A direct visual comparison among different sequences is easily available. Furthermore, the features which are visualized indicate further studies which should be carried ou...
Citació
Subirana, J.; Anokian, E. Visualization of sequence and structural features of genomes and chromosome fragments. Application to CpG islands, Alu sequences and whole genomes. "Gene", 01 Març 2011, vol. 473, núm. 2, p. 76-81.
Grup de recerca
MACROM - Cristal·lografia, Estructura i Funció de Macromolècules Biològiques

Participants

  • Subirana Torrent, Juan Antonio  (autor)
  • Anokian, Ezequiel  (autor)