Carregant...
Carregant...

Vés al contingut (premeu Retorn)

Scalable multicore architectures for long DNA sequence comparison

Autor
Sanchez, F.; Cabarcas, F.; Alex Ramirez; Valero, M.
Tipus d'activitat
Article en revista
Revista
Concurrency and computation. Practice and experience
Data de publicació
2011-12-10
Volum
23
Número
17
Pàgina inicial
2205
Pàgina final
2219
DOI
https://doi.org/10.1002/cpe.1753 Obrir en finestra nova
URL
http://onlinelibrary.wiley.com/doi/10.1002/cpe.1753/abstract Obrir en finestra nova
Resum
Biological sequence comparison is one of the most important tasks in Bioinformatics. Owing to the fast growth of databases that contain biological information, sequence comparison represents an important challenge for high-performance computing, especially when very long sequences are compared, i.e. the complete genome of several organisms. The Smith–Waterman (SW) algorithm is an exact method based on dynamic programming to quantify local similarity between sequences. The inherent large parall...
Paraules clau
Multicores architectures, Performance scalability, Sequence comparison
Grup de recerca
CAP - Grup de Computació d'Altes Prestacions

Participants

  • Sanchez Castaño, Friman  (autor)
  • Cabarcas Jaramillo, Felipe  (autor)
  • Ramirez Bellido, Alejandro  (autor)
  • Valero Cortes, Mateo  (autor)