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Taxonomic assignment in metagenomics with TANGO

Autor
Alonso-Alemany, D.; Clemente, J.; Jansson, J.; Valiente, G.
Tipus d'activitat
Article en revista
Revista
EMBnet.journal
Data de publicació
2011-12-01
Volum
17
Número
2
Pàgina inicial
46
Pàgina final
50
Repositori
http://hdl.handle.net/2117/16286 Obrir en finestra nova
URL
http://journal.embnet.org/index.php/embnetjournal/article/view/237/531 Obrir en finestra nova
Resum
One of the main computational challenges facing metagenomic analysis is the taxonomic identification of short DNA fragments. The combination of sequence alignment methods with taxonomic assignment based on consensus can provide an accurate estimate of the microbial diversity in a sample. In this note, we show how recent improvements to these consensus methods, as implemented in the latest release of the TANGO tool, can provide an improved estimate of diversity in simulated datasets.
Citació
Alonso-Alemany, D. [et al.]. Taxonomic assignment in metagenomics with TANGO. "EMBnet.journal", 01 Desembre 2011, vol. 17, núm. 2, p. 46-50.
Grup de recerca
ALBCOM - Algorismia, Bioinformàtica, Complexitat i Mètodes Formals

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