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Parallel Continuous Flow: A Parallel Suffix Tree Construction Tool for Whole Genomes

Autor
Comin, M.; Farreras, M.
Tipus d'activitat
Article en revista
Revista
Journal of computational biology
Data de publicació
2014-04-01
Volum
21
Número
4
Pàgina inicial
330
Pàgina final
344
DOI
https://doi.org/10.1089/cmb.2012.0256 Obrir en finestra nova
Projecte finançador
Computación de altas prestaciones V: arquitecturas, compiladores, sistemas operativos, herramientas y aplicaciones
URL
http://www.ncbi.nlm.nih.gov/pubmed/24597675 Obrir en finestra nova
Resum
The construction of suffix trees for very long sequences is essential for many applications, and it plays a central role in the bioinformatic domain. With the advent of modern sequencing technologies, biological sequence databases have grown dramatically. Also the methodologies required to analyze these data have become more complex everyday, requiring fast queries to multiple genomes. In this article, we present parallel continuous flow (PCF), a parallel suffix tree construction method that is ...
Paraules clau
ALGORITHM, COMPRESSION, MOTIFS
Grup de recerca
CAP - Grup de Computació d'Altes Prestacions

Participants

  • Comin, Matteo  (autor)
  • Farreras Esclusa, Montserrat  (autor)