We have developed an individual-based model for denitrifying bacteria. The model , called INDISIM-Paraccocus, embeds a thermodynamic model for bacterial yield prediction inside
the individual-based model INDISIM, and is designed to simulate the bacterial cell population behaviour and the
in the culture.
Araujo, P., Gras, A., Ginovart, M. INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium. "Journal of theoretical biology", 2016, vol. 403, p. 45-58.