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INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium

Author
Araujo, P.; Gras, A.; Ginovart, M.
Type of activity
Journal article
Journal
Journal of theoretical biology
Date of publication
2016
Volume
403
First page
45
Last page
58
DOI
https://doi.org/10.1016/j.jtbi.2016.05.017 Open in new window
Repository
http://hdl.handle.net/2117/97256 Open in new window
URL
http://www.sciencedirect.com/science/article/pii/S0022519316300959 Open in new window
Abstract
We have developed an individual-based model for denitrifying bacteria. The model , called INDISIM-Paraccocus, embeds a thermodynamic model for bacterial yield prediction inside the individual-based model INDISIM, and is designed to simulate the bacterial cell population behaviour and the product dynamics with in the culture.
Citation
Araujo, P., Gras, A., Ginovart, M. INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium. "Journal of theoretical biology", 2016, vol. 403, p. 45-58.
Keywords
Individual-based model
Group of research
BIOCOM-SC - Computational Biology and Complex Systems Group

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