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Digitally stained confocal microscopy through deep learning

Author
Combalia Escudero, Marc; Pérez, J.; García, A.; Alos, L.; Vilaplana, V.; Marques, F.; Puig, S.; Malvehy, J.
Type of activity
Presentation of work at congresses
Name of edition
2nd International Conference on Medical Imaging with Deep Learning
Date of publication
2019
Presentation's date
2019-07-10
Book of congress proceedings
International Conference on Medical Imaging with Deep Learning: 8-10 July 2019, London, United Kingdom: proceedings of Machine Learning Research
First page
121
Last page
129
Publisher
Microtome Publishing
Project funding
Multimodal Signal Processing and Machine Learning on Graphs
Repository
http://hdl.handle.net/2117/167907 Open in new window
https://openreview.net/group?id=MIDL.io/2019/Conference Open in new window
URL
http://proceedings.mlr.press/ Open in new window
Abstract
Specialists have used confocal microscopy in the ex-vivo modality to identify Basal Cell Carcinoma tumors with an overall sensitivity of 96.6% and specificity of 89.2% (Chung et al., 2004). However, this technology hasn’t established yet in the standard clinical practice because most pathologists lack the knowledge to interpret its output. In this paper we propose a combination of deep learning and computer vision techniques to digitally stain confocal microscopy images into H&E-like slides, e...
Citation
Combalia Escudero, M. [et al.]. Digitally stained confocal microscopy through deep learning. A: International Conference on Medical Imaging with Deep Learning. "International Conference on Medical Imaging with Deep Learning: 8-10 July 2019, London, United Kingdom: proceedings of Machine Learning Research". Brookline, MA: Microtome Publishing, 2019, p. 121-129.
Keywords
Confocal microscopy, CycleGAN, Deep learning, Digital staining, Neural networks, Speckle noise
Group of research
GPI - Image and Video Processing Group
IDEAI-UPC - Intelligent Data Science and Artificial Intelligence Research Center

Participants

  • Combalia Escudero, Marc  (author and speaker )
  • Pérez Ankar, Javiera  (author and speaker )
  • García Herrera, Adriana  (author and speaker )
  • Alos, Llúcia  (author and speaker )
  • Vilaplana Besler, Veronica  (author and speaker )
  • Marques Acosta, Fernando  (author and speaker )
  • Puig, Susana  (author and speaker )
  • Malvehy Guilera, Josep  (author and speaker )

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